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1

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

Mikhaylichenko, Olga, Bondarenko, Vladyslav, Harnett, Dermot, Schor, Ignacio E., Males, Matilda, Viales, Rebecca R., Furlong, Eileen E.M.

Journal:

Genes & Development

Year:

2018

Language:

english

File:

PDF, 12.31 MB

english, 2018

2

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

Sandmann, Thomas, Jakobsen, Janus S, Furlong, Eileen E M

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 595 KB

english, 2007

3

Fragmentation of DNA in a sub-microliter microfluidic sonication device

Tseng, Qingzong, Lomonosov, Alexey M., Furlong, Eileen E. M., Merten, Christoph A.

Journal:

Year:

2012

Language:

english

File:

PDF, 977 KB

english, 2012

4

Promoter shape varies across populations and affects promoter evolution and expression noise

Schor, Ignacio E, Degner, Jacob F, Harnett, Dermot, Cannavò, Enrico, Casale, Francesco P, Shim, Heejung, Garfield, David A, Birney, Ewan, Stephens, Matthew, Stegle, Oliver, Furlong, Eileen E M

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 1.64 MB

english, 2017

5

A versatile, low-cost, multi-way microfluidic sorter for droplets, cells and embryos

Utharala, Ramesh, Tseng, Qingzong, Furlong, Eileen E. M., Merten, Christoph A.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

6

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development

Zhou, Jian, Schor, Ignacio E., Yao, Victoria, Theesfeld, Chandra L., Marco-Ferreres, Raquel, Tadych, Alicja, Furlong, Eileen E. M., Troyanskaya, Olga G., Desplan, Claude

Journal:

Year:

2019

Language:

english

File:

PDF, 11.56 MB

english, 2019

7

The road ahead in genetics and genomics

McGuire, Amy L., Gabriel, Stacey, Tishkoff, Sarah A., Wonkam, Ambroise, Chakravarti, Aravinda, Furlong, Eileen E. M., Treutlein, Barbara, Meissner, Alexander, Chang, Howard Y., LÃ³pez-Bigas, NÃºria, S

Journal:

Nature Reviews Genetics

Year:

2020

File:

PDF, 1.09 MB

2020

8

Mes2, a MADF-containing transcription factor essential for Drosophila development

Gregor Zimmermann, Eileen E. Furlong, Kaye Suyama, Matthew P. Scott

Journal:

Developmental Dynamics

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

9

Measurement of busulfan in plasma by high-performance liquid chromatography

William D. Henner, Eileen A. Furlong, Mary D. Flaherty, Thomas C. Shea, William P. Peters

Journal:

Journal of Chromatography B: Biomedical Sciences and Applications

Year:

1987

Language:

english

File:

PDF, 494 KB

english, 1987

10

Advanced nursing practice: policy, education and role development

Eileen Furlong, Rita Smith

Journal:

Journal of Clinical Nursing

Year:

2005

Language:

english

File:

PDF, 76 KB

english, 2005

11

Commentary on Liu J, Mok E and Wong T (2006) Caring in nursing: investigating the meaning of caring from the perspective of cancer patients in Beijing, China. Journal of Clinical Nursing15, 188–196

Journal:

Journal of Clinical Nursing

Year:

2007

Language:

english

File:

PDF, 60 KB

english, 2007

12

Molecular biology: A fly in the face of genomics

Furlong, Eileen E. M.

Journal:

Year:

2011

Language:

english

File:

PDF, 404 KB

english, 2011

13

10.1038/84422

Furlong, Eileen E.M., Profitt, David, Scott, Matthew P.

Journal:

Nature Biotechnology

Year:

2001

Language:

english

File:

PDF, 1.71 MB

english, 2001

14

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Zinzen, Robert P., Girardot, Charles, Gagneur, Julien, Braun, Martina, Furlong, Eileen E. M.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

15

Combinatorial Binding Leads to Diverse Regulatory Responses: Lmd Is a Tissue-Specific Modulator of Mef2 Activity

Cunha, Paulo M. F., Sandmann, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Eichenlaub, Michael P., Furlong, Eileen E. M., Schübeler, Dirk

Journal:

Year:

2010

Language:

english

File:

PDF, 2.79 MB

english, 2010

16

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Zinzen, Robert P, Girardot, Charles, Gustafson, E Hilary, Perez-Gonzalez, Alexis, Delhomme, Nicolas, Ghavi-Helm, Yad, Wilczyński, Bartek, Riddell, Andrew, Furlong, Eileen E M, Bonn, Stefan

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

17

Transcription factors: from enhancer binding to developmental control

Spitz, François, Furlong, Eileen E. M.

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

18

Conservation and divergence in developmental networks: a view from Drosophila myogenesis

Lucia Ciglar, Eileen EM Furlong

Journal:

Current Opinion in Cell Biology

Year:

2009

Language:

english

File:

PDF, 243 KB

english, 2009

19

Developmental Control of Nuclear Size and Shape by kugelkern and kurzkern

Annely Brandt, Fani Papagiannouli, Nicole Wagner, Michaela Wilsch-Bräuninger, Martina Braun, Eileen E. Furlong, Silke Loserth, Christian Wenzl, Fanny Pilot, Nina Vogt, Thomas Lecuit, Georg Krohne, Jör

Journal:

Current Biology

Year:

2006

Language:

english

File:

PDF, 1.00 MB

english, 2006

20

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

Guillaume Junion, Mikhail Spivakov, Charles Girardot, Martina Braun, E. Hilary Gustafson, Ewan Birney, Eileen E.M. Furlong

Journal:

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

21

A Functional Genomics Approach to Identify New Regulators of Wnt Signaling

Eileen E. Furlong

Journal:

Developmental Cell

Year:

2005

Language:

english

File:

PDF, 114 KB

english, 2005

22

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

Thomas Sandmann, Lars J. Jensen, Janus S. Jakobsen, Michal M. Karzynski, Michael P. Eichenlaub, Peer Bork, Eileen E.M. Furlong

Journal:

Developmental Cell

Year:

2006

Language:

english

File:

PDF, 667 KB

english, 2006

23

Genomics and Development: Taking Developmental Biology to New Heights

François Spitz, Eileen E.M. Furlong

Journal:

Developmental Cell

Year:

2006

Language:

english

File:

PDF, 344 KB

english, 2006

24

A Topographical Map of Spatiotemporal Patterns of Gene Expression

Eileen E.M. Furlong

Journal:

Developmental Cell

Year:

2008

Language:

english

File:

PDF, 85 KB

english, 2008

25

A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development

Ya-Hsin Liu, Janus S. Jakobsen, Guillaume Valentin, Ioannis Amarantos, Darren T. Gilmour, Eileen E.M. Furlong

Journal:

Developmental Cell

Year:

2009

Language:

english

File:

PDF, 2.41 MB

english, 2009

26

Dynamic Regulation by Polycomb Group Protein Complexes Controls Pattern Formation and the Cell Cycle in Drosophila

Katarzyna Oktaba, Luis Gutiérrez, Julien Gagneur, Charles Girardot, Aditya K. Sengupta, Eileen E.M. Furlong, Jürg Müller

Journal:

Developmental Cell

Year:

2008

Language:

english

File:

PDF, 2.23 MB

english, 2008

27

Oncology nursing students’ views of a modified OSCE

Eileen Furlong, Patricia Fox, Marie Lavin, Rita Collins

Journal:

European Journal of Oncology Nursing

Year:

2005

Language:

english

File:

PDF, 183 KB

english, 2005

28

Integrating transcriptional and signalling networks during muscle development

Eileen E Furlong

Journal:

Current Opinion in Genetics & Development

Year:

2004

Language:

english

File:

PDF, 331 KB

english, 2004

29

cis-Regulatory networks during development: a view of Drosophila

Stefan Bonn, Eileen E.M. Furlong

Journal:

Current Opinion in Genetics & Development

Year:

2008

Language:

english

File:

PDF, 909 KB

english, 2008

30

Enhanced function annotations for Drosophila serine proteases: A case study for systematic annotation of multi-member gene families

Parantu K. Shah, Lokesh P. Tripathi, Lars Juhl Jensen, Murad Gahnim, Christopher Mason, Eileen E. Furlong, Veronica Rodrigues, Kevin P. White, Peer Bork, R. Sowdhamini

Journal:

Year:

2008

Language:

english

File:

PDF, 2.40 MB

english, 2008

31

Challenges for modeling global gene regulatory networks during development: Insights from Drosophila

Bartek Wilczynski, Eileen E.M. Furlong

Journal:

Developmental Biology

Year:

2010

Language:

english

File:

PDF, 537 KB

english, 2010

32

The oncology nursing development project: Background and implementation

Joan Kelly, Eileen Furlong, Kathy Redmond

Journal:

European Journal of Oncology Nursing

Year:

1999

Language:

english

File:

PDF, 651 KB

english, 1999

33

Analysis of variation at transcription factor binding sites inDrosophilaand humans

Mikhail Spivakov, Junaid Akhtar, Pouya Kheradpour, Kathryn Beal, Charles Girardot, Gautier Koscielny, Javier Herrero, Manolis Kellis, Eileen EM Furlong, Ewan Birney

Journal:

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

34

Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

Bonn, Stefan, Zinzen, Robert P, Perez-Gonzalez, Alexis, Riddell, Andrew, Gavin, Anne-Claude, Furlong, Eileen E M

Journal:

Bioentrepreneur

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

35

Divergence incis-regulatory networks: taking the 'species' out of cross-species analysis

Robert P Zinzen, Eileen EM Furlong

Journal:

Year:

2008

Language:

english

File:

PDF, 56 KB

english, 2008

36

Trihalomethane levels in chlorinated Michigan drinking water

Furlong, Eileen A.-N., D'Itri, Frank M.

Journal:

Ecological Modelling

Year:

1986

Language:

english

File:

PDF, 528 KB

english, 1986

37

Gamma Endonuclease of Micrococcus luteus: Action on Irradiated DNA

Timothy J. Jorgensen, Eileen A. Furlong and William D. Henner

Journal:

Radiation Research

Year:

1988

Language:

english

File:

PDF, 1.23 MB

english, 1988

38

Production of dihydrothymidine stereoisomers in DNA by .gamma.-irradiation

Furlong, Eileen A., Jorgensen, Timothy J., Henner, William D.

Journal:

Year:

1986

Language:

english

File:

PDF, 747 KB

english, 1986

39

Enhancer loops appear stable during development and are associated with paused polymerase

Ghavi-Helm, Yad, Klein, Felix A., Pakozdi, Tibor, Ciglar, Lucia, Noordermeer, Daan, Huber, Wolfgang, Furlong, Eileen E. M.

Journal:

Year:

2014

Language:

english

File:

PDF, 8.74 MB

english, 2014

40

Logical modelling of Drosophila signalling pathways

Mbodj, Abibatou, Junion, Guillaume, Brun, Christine, Furlong, Eileen E. M., Thieffry, Denis

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 3.40 MB

english, 2013

41

Model-based method for transcription factor target identification with limited data

Honkela, Antti, Girardot, Charles, Gustafson, E. Hilary, Liu, Ya-Hsin, Furlong, Eileen E. M., Lawrence, Neil D., Rattray, Magnus

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

42

[Molecular Biology Intelligence Unit] Muscle Development in Drosophila || Whole Genome Approaches to Studying Drosophila Muscle Development

Furlong, Eileen E. M.

Year:

2006

Language:

english

File:

PDF, 945 KB

english, 2006

43

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Hooper, Sean D, Boué, Stephanie, Krause, Roland, Jensen, Lars J, Mason, Christopher E, Ghanim, Murad, White, Kevin P, Furlong, Eileen EM, Bork, Peer

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 554 KB

english, 2007

44

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

Erceg, Jelena, Saunders, Timothy E., Girardot, Charles, Devos, Damien P., Hufnagel, Lars, Furlong, Eileen E. M., Levine, Michael

Journal:

Year:

2014

Language:

english

File:

PDF, 9.89 MB

english, 2014

45

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

Wilczynski, Bartek, Liu, Ya-Hsin, Yeo, Zhen Xuan, Furlong, Eileen E. M., Segal, Eran

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 930 KB

english, 2012

46

FourCSeq: analysis of 4C sequencing data

Klein, Felix A., Pakozdi, Tibor, Anders, Simon, Ghavi-Helm, Yad, Furlong, Eileen E. M., Huber, Wolfgang

Journal:

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

47

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

Cannavò, Enrico, Khoueiry, Pierre, Garfield, David A., Geeleher, Paul, Zichner, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Korbel, Jan O., Furlong, Eileen E.M.

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 3.35 MB

english, 2016

48

Model-based method for transcription factor target identification with limited data

Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray and David Baker

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

File:

PDF, 1.66 MB

2010

49

Model-based method for transcription factor target identification with limited data

Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray and David Baker

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

50

Next-generation sequencing-based detection of germline L1-mediated transductions

Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.39 MB

english, 2016